BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB020F08LP1|AL427653
(1010 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig574 643 0.0
>3x_Contig574
Length = 2771
Score = 643 bits (324), Expect = 0.0
Identities = 473/500 (94%), Gaps = 17/500 (3%)
Strand = Plus / Plus
Query: 1 gactacagtattagattcgtgcaagaatttggaacaaatcacctacacattatatcagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2247 gactacagtattagattcgtgcaagaatttggaacaaatcacctacacattatatcagat 2306
Query: 61 cgccagaagcgcatgtatatataacgttgcagaaatagtaattttgaaggcagaatcgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2307 cgccagaagcgcatgtatatataacgttgcagaaatagtaattttgaaggcagaatcgga 2366
Query: 121 gaccaacaagggcgaatcagaccgcaaaaatgataaaaaacagggtgcaaagatcaagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2367 gaccaacaagggcgaatcagaccgcaaaaatgataaaaaacagggtgcaaagatcaagtt 2426
Query: 181 tgatgatgggaataataccaacaatgcatcaactgaatatctagaggattccgaaaaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2427 tgatgatgggaataataccaacaatgcatcaactgaatatctagaggattccgaaaaaga 2486
Query: 241 agatgggaagaaaaggctttcaaaaccaatgttgatggcttcgttgctacagttcttcat 300
||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||
Sbjct: 2487 agatgggaagaaaaggctttcaaaacc-atgttgatggctt-gttgctac-gttcttcat 2543
Query: 301 cacaccgccataccttgtcaacagtgtgttcaaaaaggactatatgaagtattttactta 360
|||| ||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 2544 caca-cgccata-cttgtcaa-agtgtgttc-aaaaggactatatgaagtattttactta 2599
Query: 361 cgctaagcaattgcctagaattccttctttaccgttcatgagattttatcaagataataa 420
||| ||||||||| ||||||||| || |||||||||| |||| ||||||||||| || |
Sbjct: 2600 -gct-agcaattgcttagaattcc-tccttaccgttca-gagaatttatcaagat-atta 2654
Query: 421 tggtagatatagagaagggctggcaatcagaatgagcaaacctggtgaacgtggaaaatc 480
||| | | |||||||||| ||||||| || |||||||||||||||||| |||| |||||
Sbjct: 2655 tgggtggtttagagaaggg-tggcaataag-atgagcaaacctggtgaa-gtgg-aaatc 2710
Query: 481 aaagaaatcattcgatcaaa 500
|||| ||||||||| |||||
Sbjct: 2711 aaag-aatcattcgttcaaa 2729
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8698
Number of Sequences: 1807
Number of extensions: 8698
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 1010
length of database: 10,358,551
effective HSP length: 16
effective length of query: 994
effective length of database: 10,329,639
effective search space: 10267661166
effective search space used: 10267661166
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.7 bits)